rs6511720 chr19:11091630 G>T
- Sequence
caccaatcaacctcttccttaaga[G/T]aaaatgttaaggaagtcttaggca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.30 | -4.89 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
EMBL-EBI abdominal aortic aneurysm, cardiovascular disease risk factors, carotid intima media thickness, cholesterol, total, coronary artery disease, coronary artery disease (myocardial infarction, percutaneous transluminal coronary angioplasty, coronary artery bypass grafting, angina or chromic ischemic heart disease), ldl cholesterol, lipid metabolism phenotypes, lipoprotein phospholipase a2 activity in cardiovascular disease, lipoprotein-associated phospholipase a2 activity and mass, low density lipoprotein cholesterol levels, medication use (hmg coa reductase inhibitors), metabolite levels, parental longevity (combined parental attained age, martingale residuals), total cholesterol levels
GRASP alpha-tocopherol plasma levels, apob (apolipoprotein b), apob (apolipoprotein b) response after 40mg daily simvastatin treatment, apob assay lipoprotein fraction concentration, apob assay lipoprotein fraction concentration in fasting sample, carotid artery plaque, common carotid artery intima media thickness (imt), coronary artery disease (cad), hdl cholesterol, hdl3 cholesterol, height, internal carotid artery intima media thickness (imt), ldl cholesterol, ldl cholesterol (baseline), ldl cholesterol (female), ldl cholesterol (male), ldl cholesterol (mmol/l), ldl cholesterol among a group where cancer, diabetes, hyper/hypothyroidism and ldl-altering medications were not present, ldl cholesterol change with statins, ldl cholesterol exam 1 values, ldl cholesterol large lipoprotein fraction concentration, ldl cholesterol large lipoprotein fraction concentration in fasting sample, ldl cholesterol lipoprotein fraction concentration, ldl cholesterol lipoprotein fraction concentration in fasting sample, ldl cholesterol response after 40mg daily simvastatin treatment, ldl cholesterol response to statins (fractional change in ldl cholesterol), ldl cholesterol total lipoprotein fraction concentration, ldl cholesterol total lipoprotein fraction concentration in fasting sample, lipoprotein-associated phospholipase a2 activity (lp-pla2), lp-pla2 activity, lp-pla2 mass, metabolic syndrome domains (atherogenic dyslipidemia - pc1), metabolic syndrome domains (atherogenic dyslipidemia - pc2), metabolic syndrome domains (multivariate analysis), presence of carotid artery plaque, tetrology of fallot, total cholesterol, total cholesterol (exam 1), total cholesterol to hdl cholesterol ratio, vldl cholesterol small lipoprotein fraction concentration, vldl cholesterol small lipoprotein fraction concentration in fasting sample
PheWAS abnormal results of function studies, allergy to serum or vaccine, allergy/adverse effect of penicillin, angina pectoris, atrial fibrillation & flutter, bladder cancer, bladder cancer and neoplasms, blood in stool, carcinoma in situ of skin, cardiac arrest & ventricular fibrillation, cardiac arrhythmia nos, carditis, cerebral atherosclerosis, chorioretinal scars, chronic lymphocytic thyroiditis, chronic venous insufficiency, coagulation defects, coma, stupor, and brain damage, complications of gastrostomy, colostomy and enterostomy, congenital anomalies of peripheral vascular system, congenital anomalies of posterior segment of eye, congenital musculoskeletal anomalies, corneal edema, dermatosis nos, develomental delays and disorders, diseases of the jaws, diseases of white blood cells, disorders of lipoid metabolism, diverticulitis, diverticulosis and diverticulitis, dysmetabolic syndrome x, edema, functional digestive disorders, gastrointestinal hemorrhage, heart transplant/surgery, heartburn, hematuria, hemorrhagic disorder due to intrinsic circulating anticoagulants, hypercholesterolemia, hyperlipidemia, hypocalcemia, ileostomy status, intracranial hemorrhage (injury), joint/ligament sprain, labyrinthitis, macular degeneration, wet, malignant neoplasm of renal pelvis, mechanical complications of cardiac/vascular device, implant, and graft, mixed hyperlipidemia, muscular wasting and disuse atrophy, noninfectious gastroenteritis, noninflammatory disorders of cervix, noninflammatory disorders of ovary, fallopian tube, & broad ligament, noninflammatory female genital disorders, occlusion and stenosis of precerebral arteries, osteoarthrosis, osteoarthrosis nos, osteoarthrosis, generalized, osteoarthrosis, localized, primary, other arthropathies, other conditions of brain, nos, other dermatoses, other disorders of eye, other disorders of metabolic, endocrine, immunity disorders, other headache syndromes, other peripheral nerve disorders, pain in limb, palpitations, pericarditis, poisoning by antibiotics, psoriasis & related disorders, psoriasis vulgaris, reflux esophagitis, renal colic, renal dialysis, retinal detachments and defects, retinal edema and hypertensive retinopathy, shock, temporomandibular joint disorders, transient alteration of awareness, unspecified local infection of skin and subcutaneous tissue, unspecified monoarthritis, venous embolism & thrombosis, vitamin b-complex deficiencies, vitamin d deficiency, voice disturbance