rs6511954 chr19:14661548 T>C

Sequence
gtcacatcctccatctccaaacta[T/C]agttccctttctcacccccttatt
ASB in cell types
CD14+ monocytes MDM(monocyte derived macrophages)
ASB for transcription factors
STAT1_HUMAN TF65_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 3.08 -4.69 2.6·10-51.00 2.00 n/a No Hit
TF65_HUMAN 2.15 n/a 0.031.00 2.25 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol,  obesity with early age of onset (age >2),  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Stomach,  Testis,  Whole_Blood

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