rs6519913 chr22:45102122 G>A
- Sequence
gagcccaagcatcgggagccatgt[G/A]gccaggcagaaatgggaagtcatc
- ASB in cell types
- adrenal gland GM12878 (female B-cells lymphoblastoid cell line) bipolar neuron LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN MNT_HUMAN MYCN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.80 | 2.03 | 1.37 | n/a | No Hit | |||
| RAD21_HUMAN | 0.33 | 1.11 | 1.38 | n/a | n/a | |||
| MNT_HUMAN | 2.54 | -2.58 | 1.00 | n/a | n/a | |||
| MYCN_HUMAN | 2.03 | 0.18 | 1.17 | -7.31 | Concordant | |||
| MYC_HUMAN | 2.63 | 0.08 | 1.25 | -6.03 | Concordant |
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Motif analysis
