rs6523516 chrX:101596330 A>G

Sequence
tatctggcagagactgaagaaaga[A/G]tgtattccttcaaggatatgtgga
ASB in cell types
GM19240 (B cells Lymphoblastoid Cell Lines) GM18526 (B – cells Lymphoblastoid Cell Lines)
ASB for transcription factors
STAG1_HUMAN CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN n/a 2.36 1.006.0·10-7 3.00 n/a n/a
CTCF_HUMAN 0.33 1.45 0.679.2·10-7 2.30 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  sporadic creutzfeldt-jakob disease,  variant creutzfeldt-jakob disease
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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