rs6535234 chr4:81154134 T>C
- Sequence
gagggtcctacgcccacggagtct[T/C]gctgattgctagcacagcagtctg
- ASB in cell types
- MCF10A (breast epithelial cells) LNCaP (prostate carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- TBP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBP_HUMAN | 1.86 | 0.16 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Coronary, Esophagus_Mucosa, Lung, Ovary, Pituitary, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Uterus