rs6538617 chr12:95217365 C>T
- Sequence
agcgcccacattccgtcccgccgc[C/T]ccgcggcgcagcctgagcgccaca
- ASB in cell types
- breast tumor 22RV1 (prostate carcinoma) MOLT-4 (Adult T acute lymphoblastic leukemia) fetal bone marrow-derived mononuclear cells
- ASB for transcription factors
- CTCF_HUMAN ANDR_HUMAN SPT5H_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.92 | 0.40 | 1.30 | -4.18 | Concordant | |||
| ANDR_HUMAN | 2.61 | -5.04 | 1.75 | n/a | No Hit | |||
| SPT5H_HUMAN | 0.89 | 1.38 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Thyroid