rs6539015 chr12:101891660 T>C
- Sequence
acctacccctaaaataactgtgta[T/C]acataacagcctcaacagcttctg
- ASB in cell types
- HepG2 (hepatoblastoma) T47D (invasive ductal carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN NC2A_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.88 | 0.52 | 1.79 | 2.02 | Discordant | |||
| NC2A_HUMAN | -2.15 | 2.42 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP ldl cholesterol, ldl cholesterol change with statins, total cholesterol change with statins, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood