rs6539084 chr12:103580184 A>G

Sequence
agggccatgagggcagggagacac[A/G]tgtttggacacatcccctgcttgg
ASB in cell types
neonatal keratinocytes SJSA-1(osteosarcoma)
ASB for transcription factors
P53_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
P53_HUMAN 2.25 -0.72 3.3·10-51.00 1.30 -2.86 Concordant
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Motif analysis

P53_HUMAN Concordant
P53_HUMAN pic

Genetic associations

GRASP aortic valve calcium,  diastolic blood pressure (dbp)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid

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