rs6539188 chr12:105079336 C>T
- Sequence
ataccatcctaaatggcaagcttg[C/T]gcaacttgatgttcctattgcctc
- ASB in cell types
- MSC (mesenchymal stem cells) MOLM-13(acute monocytic leukemia(AML), Homo sapiens)
- ASB for transcription factors
- CEBPB_HUMAN CEBPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 2.86 | -0.23 | 1.40 | -5.07 | Concordant | |||
| CEBPA_HUMAN | 2.36 | -4.24 | 1.50 | 2.44 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood