rs6540978 chr1:11478999 T>C
- Sequence
gcgcagggtctcgccggccactga[T/C]tcaaggcgcggcggcgcggagccc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) hTERT-HME1(Telomerase immortalized cell line) LNCaP (prostate carcinoma)
- ASB for transcription factors
- BRCA2_HUMAN TBP_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRCA2_HUMAN | -0.39 | 0.64 | 1.00 | n/a | n/a | |||
| TBP_HUMAN | -0.97 | 1.88 | 1.00 | n/a | No Hit |
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