rs6541075 chr1:10032712 T>A
- Sequence
cgagtctgggagtcgtccctcccc[T/A]tgccagcctacctggctcaggccc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HCASMC (Human coronary artery smooth muscle cells) MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- TCF21_HUMAN RFX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | 2.40 | n/a | 3.00 | n/a | n/a | |||
| RFX1_HUMAN | n/a | 0.67 | 2.00 | 0.95 | Weak Concordant |
Items per page:
1 – 2 of 2
Motif analysis
