rs6542171 chr2:113756761 T>G
- Sequence
ggcgcgacggcggactgcgcgcgg[T/G]cgcgtatgcagcgaggcttggcgg
- ASB in cell types
- MDA-MB-231 (breast adenocarcinoma) macrophages form periferal blood CD34+ hematopoietic stem cells HEK293 (embryonic kidney)
- ASB for transcription factors
- BRD2_HUMAN BRD4_HUMAN TIF1B_HUMAN MEF2B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD2_HUMAN | 0.41 | 1.25 | 1.00 | n/a | n/a | |||
| BRD4_HUMAN | 0.23 | 0.98 | 1.36 | n/a | n/a | |||
| TIF1B_HUMAN | 2.77 | -5.29 | 2.00 | n/a | n/a | |||
| MEF2B_HUMAN | n/a | 2.62 | 2.00 | n/a | No Hit | |||
| ZF69B_HUMAN | -2.24 | 2.50 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood