rs6542521 chr2:119319833 C>T
- Sequence
aatacctaacaaagtgccctgtcc[C/T]gcagaccgtgaggtggcagtcccg
- ASB in cell types
- 22RV1 (prostate carcinoma) LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.28 | -1.15 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.21 | 2.48 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Nerve_Tibial, Pancreas, Thyroid