rs6545901 chr2:61695090 T>G
- Sequence
gctggctgccacgcgggggcgcag[T/G]cagggggtctgcgctgtgtgggta
- ASB in cell types
- A549 (lung carcinoma) GM12892 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma) Peyer's patch
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN RAD21_HUMAN GLIS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.58 | 0.11 | 1.35 | n/a | No Hit | |||
| SMC3_HUMAN | 2.06 | 0.72 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.49 | -0.26 | 1.13 | n/a | n/a | |||
| GLIS1_HUMAN | -2.41 | 1.98 | 1.25 | n/a | n/a | |||
| STAG1_HUMAN | 1.25 | 0.92 | 1.07 | n/a | n/a |
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