rs6546227 chr2:66389932 T>C
- Sequence
agtatgcttcacatatttaaggtc[T/C]acttgactcaaggaggggaaactg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HEK293 (embryonic kidney) MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- ESR1_HUMAN NCOA3_HUMAN ETV2_HUMAN FOXA1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.18 | -0.01 | 1.50 | -1.31 | Weak Concordant | |||
| NCOA3_HUMAN | 1.02 | -0.97 | 1.00 | n/a | n/a | |||
| ETV2_HUMAN | 2.72 | -4.94 | 2.00 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.71 | -0.17 | 1.37 | n/a | No Hit | |||
| ZNF24_HUMAN | 2.59 | -2.46 | 1.00 | n/a | n/a |
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Motif analysis
