rs6546399 chr2:68403514 C>T
- Sequence
aacttcccagaggctttgtttaca[C/T]tgtgagcataaaaccacctactca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF1_HUMAN MEF2B_HUMAN FOXA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 1.46 | -1.30 | 1.25 | n/a | No Hit | |||
| MEF2B_HUMAN | 2.19 | -1.71 | 1.00 | n/a | No Hit | |||
| FOXA2_HUMAN | 1.68 | n/a | 2.00 | 0.07 | Weak Discordant |
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Motif analysis
