rs6547853 chr2:28423934 G>A
- Sequence
ccctttcccatcagcattaaatgt[G/A]atcaagtatcatccatcttaaaca
- ASB in cell types
- BEAS-2B (bronchial epithelium) monocytes from periferal blood
- ASB for transcription factors
- GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.44 | 1.61 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), fasting insulin, homa-b, homa-ir, irritible bowel syndrome, ldl cholesterol, mitral annular calcium, simpson-angus scale, triglycerides, type 1 diabetes
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood