rs6549423 chr3:66816248 G>A

Sequence
agacagcctctaggagtgtagggg[G/A]aacgtgttgataagtgctaagtgc
ASB in cell types
22RV1 (prostate carcinoma) Peyer's patch
ASB for transcription factors
CTCF_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.39 0.81 1.005.3·10-5 1.25 n/a No Hit
ANDR_HUMAN 2.02 -1.02 0.021.00 2.00 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GTEx eQTL Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

Download