rs6549424 chr3:66816324 T>C

Sequence
caatgggcacatattaactctagc[T/C]aaacacactagtgccacctactgg
ASB in cell types
HeLa (cervical adenocarcinoma) 22RV1 (prostate carcinoma) FT282 (normal human fallopian tube tissue)
ASB for transcription factors
CTCF_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.35 0.73 1.005.5·10-3 1.32 n/a No Hit
ANDR_HUMAN 2.26 -0.01 0.050.96 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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