rs6558372 chr8:143547900 G>C
- Sequence
ctactaaaaacacaaaaaattagc[G/C]gggcgtggttgcaggcacctgtag
- ASB in cell types
- K562 (myelogenous leukemia) MS-1 (Small cell lung carcinoma) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN RING2_HUMAN EP400_HUMAN LMBL2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.97 | -4.27 | 1.33 | n/a | No Hit | |||
| RING2_HUMAN | 3.00 | n/a | 2.00 | n/a | n/a | |||
| EP400_HUMAN | 3.58 | n/a | 2.00 | n/a | n/a | |||
| LMBL2_HUMAN | 2.60 | n/a | 2.00 | n/a | n/a | |||
| MGAP_HUMAN | 2.33 | n/a | 2.00 | n/a | n/a |
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