rs6558373 chr8:143547910 T>G
- Sequence
cacaaaaaattagcggggcgtggt[T/G]gcaggcacctgtagtcccagctac
- ASB in cell types
- K562 (myelogenous leukemia) MS-1 (Small cell lung carcinoma) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN RING2_HUMAN SPT5H_HUMAN LMBL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.66 | n/a | 1.33 | n/a | No Hit | |||
| RING2_HUMAN | 4.05 | n/a | 2.00 | n/a | n/a | |||
| SPT5H_HUMAN | 3.47 | n/a | 2.00 | n/a | n/a | |||
| LMBL2_HUMAN | 2.59 | n/a | 2.00 | n/a | n/a | |||
| MGAP_HUMAN | 2.49 | n/a | 2.00 | n/a | n/a |
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