rs6558379 chr8:143617787 C>G
- Sequence
ttgggacggcggaaggacacgaga[C/G]gagggccagccggcagcgccgcgc
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) tibial nerve HepG2 (hepatoblastoma) HeLa (cervical adenocarcinoma)
- ASB for transcription factors
- SPT5H_HUMAN INT11_HUMAN CATA_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | -2.17 | 2.53 | 1.50 | n/a | n/a | |||
| INT11_HUMAN | n/a | 1.88 | 4.00 | n/a | n/a | |||
| CATA_HUMAN | n/a | 3.02 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.22 | 2.16 | 1.48 | 2.37 | Concordant | |||
| TCF21_HUMAN | 1.87 | n/a | 4.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood