rs6564092 chr16:85002791 C>G
- Sequence
ggaggaagaaaggggaaacccggg[C/G]atgaagagaagtgaaagcagttca
- ASB in cell types
- macrophages form periferal blood CD14+ monocytes monocyte-derived dendritic cells GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- STAT1_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.88 | n/a | 3.00 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.91 | -0.88 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Minor_Salivary_Gland, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Thyroid