rs6565300 chr16:28981728 A>C

Sequence
accccaaggccagtaattcggtcg[A/C]tactgtccccttgtggcagctgct
ASB in cell types
CD34+ hematopoietic stem cells GM12891 (male B- cells lymphoblastoid cell line) TTC-1240 (Rhabdoid tumor of the kidney)
ASB for transcription factors
TIF1B_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TIF1B_HUMAN 2.86 -5.08 3.3·10-31.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP body mass index (bmi) college completion fasting insulin hdl cholesterol homa-b homa-ir obesity with early age of onset (age >2) rheumatoid arthritis serum creatinine triglycerides change with statins years of education
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Coronary Artery_Tibial Brain_Amygdala Brain_Anterior_cingulate_cortex_BA24 Brain_Caudate_basal_ganglia Brain_Cerebellar_Hemisphere Brain_Cerebellum Brain_Cortex Brain_Frontal_Cortex_BA9 Brain_Hippocampus Brain_Hypothalamus Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Breast_Mammary_Tissue Cells_Cultured_fibroblasts Cells_EBV-transformed_lymphocytes Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Liver Lung Minor_Salivary_Gland Muscle_Skeletal Nerve_Tibial Ovary Pancreas Pituitary Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Spleen Stomach Testis Thyroid Uterus Vagina Whole_Blood

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