rs6566810 chr18:74496224 A>T
- Sequence
tcagggcggaaatggggcggggag[A/T]gagtgacaccacccctctgcctgt
- ASB in cell types
- macrophages form periferal blood adult erythroblasts CD14+ monocytes HepG2 (hepatoblastoma)
- ASB for transcription factors
- RBM25_HUMAN HCFC1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBM25_HUMAN | -1.76 | 2.37 | 3.00 | n/a | n/a | |||
| HCFC1_HUMAN | n/a | 3.26 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | -4.97 | 2.88 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid