rs6566811 chr18:74496357 G>A
- Sequence
gggccagcgccgggggtcgtggcc[G/A]ggacacgtggtacggaaccggcgc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) HepG2 (hepatoblastoma) HCASMC (Human coronary artery smooth muscle cells) K562 (myelogenous leukemia)
- ASB for transcription factors
- ATF2_HUMAN RBM25_HUMAN TCF21_HUMAN RFOX2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF2_HUMAN | -0.21 | 1.53 | 1.00 | n/a | No Hit | |||
| RBM25_HUMAN | 2.22 | -1.21 | 3.00 | n/a | n/a | |||
| TCF21_HUMAN | 2.10 | -2.85 | 6.00 | n/a | n/a | |||
| RFOX2_HUMAN | 1.31 | 0.10 | 1.58 | n/a | n/a | |||
| IKZF2_HUMAN | -0.77 | 1.31 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Heart_Left_Ventricle, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood