rs6566980 chr18:58564726 C>T

Sequence
ttcatgtttgaccccttcagttta[C/T]actgaggaaagaggcccaaagaga
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 1.09 -0.16 4.2·10-31.00 1.49 -0.50 Weak Concordant
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Motif analysis

ANDR_HUMAN Weak Concordant
ANDR_HUMAN pic

Genetic associations

GRASP adiponectin levels,  age at death with kuru exposure,  ldl cholesterol,  mitral annular calcium,  schizophrenia,  sporadic creutzfeldt-jakob disease,  tetrology of fallot
GTEx eQTL Adipose_Subcutaneous,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Skin_Sun_Exposed_Lower_leg

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