rs6571340 chr14:20682436 G>A
- Sequence
cgcacctgtccatggcctgttagg[G/A]acccggctgtacagcaggaggtga
- ASB in cell types
- keratinocytes HepG2 (hepatoblastoma) foreskin keratinocyte renal cortex
- ASB for transcription factors
- SNAI2_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 3.56 | n/a | 1.50 | n/a | No Hit | |||
| CTCF_HUMAN | 0.47 | 0.88 | 1.21 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Colon_Transverse, Esophagus_Mucosa, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood