rs6572702 chr14:50865504 T>C

Sequence
cgctacatatgattattttaaaac[T/C]cctctctaggggcaggttgttcct
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
ESR1_HUMAN AHR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN 2.35 -0.59 8.3·10-51.00 1.71 n/a No Hit
AHR_HUMAN 2.84 -5.17 8.9·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels,  alzheimers disease,  rheumatoid arthritis,  stabilized warfarin dose,  tetrology of fallot,  total cholesterol
GTEx eQTL Brain_Caudate_basal_ganglia,  Brain_Nucleus_accumbens_basal_ganglia

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