rs6574342 chr14:76956523 G>A
- Sequence
ccggctgccgcccagcgccagcca[G/A]agcccaccccgcctccctgcagga
- ASB in cell types
- BEAS-2B (bronchial epithelium) HUVEC-C (HUVEC, umbilical vein endothelial cells) NCI-H2171 (small cell lung carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- GCR_HUMAN NOTC1_HUMAN UBP7_HUMAN TCF21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.02 | 0.69 | 1.00 | n/a | No Hit | |||
| NOTC1_HUMAN | n/a | 2.13 | 3.00 | n/a | n/a | |||
| UBP7_HUMAN | 2.56 | -2.35 | 1.00 | n/a | n/a | |||
| TCF21_HUMAN | n/a | 1.99 | 3.00 | n/a | n/a | |||
| MYC_HUMAN | 1.80 | -0.04 | 1.50 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Prostate