ADASTRA v5.1.3
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rs6574613
chr14:80941756
A
>
G
Sequence
ttgaactagccgcccagccacagc[A/G]agagtacaggaccccgctgccgcc
ASB in cell types
adult erythroblasts
MCF7 (Invasive ductal breast carcinoma)
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
HCFC1_HUMAN
ZN341_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HCFC1_HUMAN
0.30
0.71
0.84
7.9·10
-4
1.83
n/a
n/a
ZN341_HUMAN
2.56
-2.35
7.8·10
-3
1.00
1.00
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
hdl cholesterol
,
prop taste detection threshold
,
total cholesterol
GTEx eQTL
Brain_Caudate_basal_ganglia
,
Brain_Cerebellar_Hemisphere
,
Brain_Cerebellum
,
Brain_Putamen_basal_ganglia
,
Cells_Cultured_fibroblasts
,
Esophagus_Mucosa
,
Muscle_Skeletal
,
Spleen
,
Testis
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)