rs6575130 chr14:90383503 C>A

Sequence
atagtgccctcgcccttgcctcgc[C/A]ccgcccgcgagcgctccaaaggct
ASB in cell types
CD14+ monocytes HeLa (cervical adenocarcinoma) 22RV1 (prostate carcinoma) A549 (lung carcinoma)
ASB for transcription factors
STAT1_HUMAN ANDR_HUMAN INT11_HUMAN SRBP2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN n/a 4.19 1.001.8·10-6 2.00 n/a No Hit
ANDR_HUMAN n/a 3.12 1.007.0·10-5 2.00 n/a No Hit
INT11_HUMAN 2.51 -0.72 7.8·10-51.00 2.00 n/a n/a
SRBP2_HUMAN 1.47 -0.40 3.0·10-31.00 2.75 -2.44 Concordant
TBP_HUMAN 2.67 -2.54 6.1·10-31.00 1.33 n/a No Hit
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Motif analysis

SRBP2_HUMAN Concordant
SRBP2_HUMAN pic

Genetic associations

GRASP adiponectin levels,  advanced age-related macular degeneration,  advanced age-related macular degeneration (geographic atrophy),  ldl cholesterol,  microalbuminuria,  total cholesterol
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Frontal_Cortex_BA9,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Substantia_nigra,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid

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