rs6576976 chr2:96580930 T>C
- Sequence
gcagtagcaagaactcagaaccag[T/C]gctgccacctcctgttaggccagg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HCT-116 (colon carcinoma) PANC1 (pancreatic ductal adenocarcinoma) neural progenitors
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN NFIC_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.85 | 0.00 | 1.74 | -0.20 | Weak Concordant | |||
| RAD21_HUMAN | 2.33 | -0.28 | 1.51 | n/a | n/a | |||
| NFIC_HUMAN | 2.84 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood