rs6577442 chr1:7402088 T>C
- Sequence
gatgagtgactaaggcagcaaggg[T/C]gtcagcactctgacatgaatagtt
- ASB in cell types
- HEK293 (embryonic kidney) renal cortex HUVEC-C (HUVEC, umbilical vein endothelial cells) BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- CREB1_HUMAN TF65_HUMAN GLIS1_HUMAN KLF8_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | -2.29 | 2.60 | 1.00 | 4.02 | Concordant | |||
| TF65_HUMAN | -0.50 | 1.91 | 2.67 | n/a | No Hit | |||
| GLIS1_HUMAN | n/a | 2.08 | 2.00 | n/a | n/a | |||
| KLF8_HUMAN | n/a | 2.54 | 2.00 | n/a | No Hit | |||
| GCR_HUMAN | 0.56 | 0.84 | 1.07 | n/a | No Hit |
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Motif analysis
