rs6578129 chr8:140646791 G>A
- Sequence
agcctcccagccacacgcagctgc[G/A]ccagctaatgcacagaggtggagt
- ASB in cell types
- SU-DHL-2 (anaplastic large cell lymphoma) RD (Embryonal rhabdomyosarcoma)
- ASB for transcription factors
- ITF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ITF2_HUMAN | 0.07 | 2.62 | 2.00 | 3.07 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Colon_Sigmoid, Colon_Transverse, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid