rs6578177 chr8:141404226 T>C
- Sequence
gatttttttttctcgtcagcgtta[T/C]cacaaaaccacgttgaaagcaaca
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) Th1-cells CTV-1 (Adult T acute lymphoblastic leukemia) SEM (childhood B acute lymphoblastic leukemia)
- ASB for transcription factors
- TBX21_HUMAN PKNX1_HUMAN ETS1_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX21_HUMAN | -2.78 | 3.46 | 1.50 | n/a | No Hit | |||
| PKNX1_HUMAN | -3.35 | 3.39 | 1.00 | n/a | No Hit | |||
| ETS1_HUMAN | -4.00 | 2.71 | 1.50 | n/a | No Hit | |||
| IKZF1_HUMAN | -1.68 | 1.63 | 1.25 | n/a | No Hit | |||
| RUNX3_HUMAN | -4.99 | 3.01 | 1.50 | 4.77 | Concordant |
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Motif analysis
