rs6578343 chr11:3379257 A>C
- Sequence
cctactcctctgattggatagggc[A/C]tcacgccccgccccctcaggccct
- ASB in cell types
- CD34+ hematopoietic stem cells-derived proerythroblasts 22RV1 (prostate carcinoma) A549 (lung carcinoma) adult erythroblasts
- ASB for transcription factors
- GATA1_HUMAN ANDR_HUMAN HCFC1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA1_HUMAN | -5.13 | 3.05 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | n/a | 3.27 | 2.00 | n/a | No Hit | |||
| HCFC1_HUMAN | -4.75 | 2.65 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP homa-b, lung function, forced expiratory volume in 1 second (fev1) percent predicted (in nonasthmatic participants)
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood