rs6579838 chr5:151093543 A>C
- Sequence
aacaaatttcagaatgtagagaga[A/C]tccctctttcggggagtcacagaa
- ASB in cell types
- GM02630 (Fanconi anemi) thoracic aorta foreskin keratinocyte HMEC (human mammary epithelial cells)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN STAG2_HUMAN SPI1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.55 | 2.15 | 1.35 | n/a | No Hit | |||
| STAG1_HUMAN | n/a | 3.07 | 1.00 | n/a | n/a | |||
| STAG2_HUMAN | n/a | 2.49 | 1.00 | n/a | n/a | |||
| SPI1_HUMAN | 2.11 | -0.10 | 1.83 | 3.83 | Discordant |
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Motif analysis
