rs6580058 chr5:154198359 T>C
- Sequence
aatgcttggtacagaacaagtgct[T/C]ggtaaacatggtgatgccgctgcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| GM12878 (female B-cells lymphoblastoid cell line) | 0.46 | 0.93 | 1.13 |
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Motif analysis
No data available
Genetic associations
GRASP ldl cholesterol, rheumatoid arthritis, combined control dataset, gender differentiated, total cholesterol