rs6580519 chr5:148095076 A>C

Sequence
ccagttcctcccggtcttggccag[A/C]tgatgtcccctcctcttgtagatt
ASB in cell types
D283 Med (medulloblastoma)
ASB for transcription factors
OTX2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
OTX2_HUMAN -2.57 1.67 1.000.03 1.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  obesity with early age of onset (age >2),  triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Minor_Salivary_Gland,  Muscle_Skeletal,  Pancreas,  Pituitary,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Thyroid

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