rs6580779 chr12:51026381 C>A
- Sequence
tccatattccgggagccagcgcca[C/A]gctggctaacgccctcccctcccc
- ASB in cell types
- primary B-CLL cells 22RV1 (prostate carcinoma) breast tumor monocytes from periferal blood
- ASB for transcription factors
- BRD4_HUMAN ANDR_HUMAN ESR1_HUMAN SRBP2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | -4.16 | 2.31 | 2.00 | n/a | n/a | |||
| ANDR_HUMAN | n/a | 3.79 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | n/a | 2.51 | 2.00 | n/a | No Hit | |||
| SRBP2_HUMAN | 1.75 | 0.99 | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Stomach, Testis, Whole_Blood