rs6581670 chr12:66270211 G>T
- Sequence
gtgtaaaaaactgaaattgaacat[G/T]gcatttaattttgcatattaataa
- ASB in cell types
- foreskin keratinocyte GM12892 (female B-cells lymphoblastoid cell line) H929 (plasma cell myeloma) RWPE2
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| foreskin keratinocyte | 1.93 | -1.25 | 1.50 | |||
| GM12892 (female B-cells lymphoblastoid cell line) | 1.52 | -0.74 | 1.00 | |||
| H929 (plasma cell myeloma) | -1.47 | 2.05 | 1.00 | |||
| RWPE2 | -1.36 | 1.64 | 1.00 |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, infant head circumference, ldl cholesterol change with statins, refractive error, total cholesterol, transmission distortion
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Uterus, Whole_Blood