rs6582993 chr1:106920964 G>A
- Sequence
ttccctcatgttaaataattaatc[G/A]catatctctaaaaatgttccactt
- ASB in cell types
- LNCaP (prostate carcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.27 | 1.29 | 1.63 | 2.74 | Concordant | |||
| FOXA1_HUMAN | 0.33 | 1.70 | 2.00 | n/a | No Hit |
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Motif analysis
