rs6585679 chr10:83917665 A>C
- Sequence
gagcacctcagaggaagtgagaca[A/C]cacgtggagggatgagggcggtgg
- ASB in cell types
- GM19193 (female B-cells Lymphoblastoid Cell Lines) CTV-1 (Adult T acute lymphoblastic leukemia) K562 (myelogenous leukemia) GM12892 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- CTCF_HUMAN SPI1_HUMAN RING2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -1.01 | 3.21 | 1.14 | 2.64 | Concordant | |||
| SPI1_HUMAN | 0.42 | 3.48 | 1.00 | n/a | No Hit | |||
| RING2_HUMAN | -2.40 | 2.75 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), simpson-angus scale, stabilized warfarin dose