rs6586537 chr1:16905795 G>T
- Sequence
ggattttaatcctctgggcctgag[G/T]gcactcaataaaatcctcctgttc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- EP300_HUMAN SUMO2_HUMAN NELFA_HUMAN ZN444_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP300_HUMAN | 3.59 | n/a | 1.50 | n/a | n/a | |||
| SUMO2_HUMAN | 2.57 | -4.57 | 1.50 | n/a | n/a | |||
| NELFA_HUMAN | 1.60 | -0.98 | 1.00 | n/a | n/a | |||
| ZN444_HUMAN | -4.75 | 2.34 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood