rs6589734 chr11:119315693 T>C
- Sequence
ccaggggaagacaccactgctcta[T/C]cctctgccctccaaaatccctgcc
- ASB in cell types
- MDA-MB-231 (breast adenocarcinoma) MDA-MB-231-1833 (breast cancer cells, bone-tropic metastatic line) glioblastoma cells MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line)
- ASB for transcription factors
- JUN_HUMAN CDN1B_HUMAN ESR2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 0.36 | 1.60 | 3.62 | n/a | No Hit | |||
| CDN1B_HUMAN | -4.01 | 2.39 | 3.40 | n/a | n/a | |||
| ESR2_HUMAN | n/a | 0.89 | 4.00 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Thyroid