rs6589845 chr11:120818326 A>T

Sequence
cgggccttcccctctatcttgccc[A/T]tttgtgaccttttcctttcaaggt
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
SMAD4_HUMAN NR2F6_HUMAN RXRB_HUMAN FOXA2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMAD4_HUMAN n/a 3.62 1.009.9·10-6 1.50 n/a No Hit
NR2F6_HUMAN n/a 3.14 1.006.4·10-5 1.67 n/a n/a
RXRB_HUMAN -3.73 3.41 1.001.3·10-4 1.00 n/a No Hit
FOXA2_HUMAN -4.50 3.03 1.001.0·10-3 1.33 n/a No Hit
P66A_HUMAN -3.29 3.18 1.002.2·10-3 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration,  hdl cholesterol,  homa-ir,  total cholesterol,  triglycerides change with statins
GTEx eQTL Brain_Caudate_basal_ganglia,  Whole_Blood

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