rs6645 chr12:14774891 C>G
- Sequence
cgccgccctcagggagctggctcc[C/G]ccagcaaaggcccttttcatggtc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- IKZF2_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | -1.44 | 2.00 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.31 | -1.25 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Artery_Tibial, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Testis