rs6662427 chr1:94759325 G>A
- Sequence
tcagtttaaagcaaattagataca[G/A]tagagactcattcacatattgttt
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- P66A_HUMAN TBX3_HUMAN FOXA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| P66A_HUMAN | -4.00 | 3.68 | 1.00 | n/a | n/a | |||
| TBX3_HUMAN | n/a | 3.34 | 1.00 | n/a | No Hit | |||
| FOXA3_HUMAN | n/a | 3.00 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid