rs6662427 chr1:94759325 G>A

Sequence
tcagtttaaagcaaattagataca[G/A]tagagactcattcacatattgttt
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
P66A_HUMAN TBX3_HUMAN FOXA3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
P66A_HUMAN -4.00 3.68 1.001.8·10-5 1.00 n/a n/a
TBX3_HUMAN n/a 3.34 1.004.6·10-4 1.00 n/a No Hit
FOXA3_HUMAN n/a 3.00 1.002.7·10-3 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP urinary albumin-to-creatinine ratio
GTEx eQTL Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Lung,  Minor_Salivary_Gland,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid

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