rs6662607 chr1:67555819 C>T
- Sequence
acacctgtctacatctttcaaagc[C/T]ttatcacctttgtaatttaagcag
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- IKZF1_HUMAN IKZF2_HUMAN MTA2_HUMAN NFAC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -2.47 | 2.61 | 1.25 | n/a | No Hit | |||
| IKZF2_HUMAN | -1.36 | 2.02 | 1.00 | n/a | n/a | |||
| MTA2_HUMAN | -3.76 | 2.28 | 1.50 | n/a | n/a | |||
| NFAC3_HUMAN | n/a | 2.40 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP arthritis including non-rheumatoid, hdl cholesterol, primary rhegmatogenous retinal detachment, triglycerides